Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RFX1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

dev stage
adult
donor ID
ENCDO000AAE
age
69 year
sex
female
lab
Michael Snyder, Stanford
health state
breast cancer (adenocarcinoma)
sample type
immortalized cell line
cell line
MCF-7

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
22589118
Reads aligned (%)
97.8
Duplicates removed (%)
1.8
Number of peaks
9380 (qval < 1E-05)

hg19

Number of total reads
22589118
Reads aligned (%)
96.8
Duplicates removed (%)
2.0
Number of peaks
9004 (qval < 1E-05)

Base call quality data from DBCLS SRA