Antigen

Antigen Class

TFs and others

Antigen

RFX1

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

dev stage

adult

donor ID

ENCDO000AAE

age

69 year

sex

female

lab

Michael Snyder, Stanford

health state

breast cancer (adenocarcinoma)

sample type

immortalized cell line

cell line

MCF-7

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads

22589118

Reads aligned (%)

97.8

Duplicates removed (%)

1.8

Number of peaks

9380 (qval < 1E-05)

hg19

Number of total reads

22589118

Reads aligned (%)

96.8

Duplicates removed (%)

2.0

Number of peaks

9004 (qval < 1E-05)